Shortly after the Animatrix's "Final Flight Of The Osiris" short, Niobe (Jada Pinkett-Smith) and Ghost (Anthony Wong) must retrieve the package at a post office before the machines do. After succeeding, they call the rest of the Zion fleet to warn the Resistance about the machines digging for Zion. The game then runs a parallel story to Matrix Reloaded which explains what Niobe and Ghost were doing while the movie was focused on Neo, Morpheus, and Trinity.