Five years after the rebellion on Mars, Alias, a soldier employed by Chancellor Sopot, steals nanotechnology that Sopot uses to make supersolidiers out of his men. He saw what he created, and feared it. He ordered them killed. 2,000 soldiers were killed by Sopot's elite guard. However, six soldiers survived. They are Molov, the squad's leader; Shrike, a vehicle specialist; Tangier, a stealth specialist; Repta, a heavy weapons specialist; Quill, an expert sniper; and Alias, who is skilled with demolitions.
Alias follows and manages to blow up Sopot for revenge in a missile silo, but things go bad when Molov decides to become the new chancellor with the Red Faction, who they had previously allied with, being slaughtered. Repta, Quill, and Shrike join him, but Alias, Tangier and Echo, leader of the Red Faction, do not. Then the city is assaulted by the Red Faction. Molov plans to make nanotech supersoldiers. Echo is then shot with a rail charge by Quill. Alias tracks her down and kills her. Then he makes it to a statue of Sopot, where the nanotech lab is. He shoots Repta into an industrial processor. When he is about to get to Molov Repta reappears deformed but enhanced. Alias shoots Repta, who gets a migrane and blows up.
Eventually Alias and Tangier catch up to Molov. Shrike betrays Molov, and comes to Alias's aid. Tangier jumps off the statue with the Nanocell. Alias kills Molov, and escapes with the help of Shrike.